Some variation between countries. I.e. Order Bacteroidales, but not much.
Could’ve tested for significance.
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Only two principal components –> 100% variance.
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Clear division of countries.
Along PC1, Fusobacteria and Bacteroidota (order = Bacteroidales). Correlation with heatmap.
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Test to see if there is a significant difference in the proportion of endometriosis-associated genomes between countries
Fisher Exact Test Results
| USA |
China |
0.0205 |
2.670 |
1.113 |
7.779 |
| USA |
Denmark |
0.1554 |
4.648 |
0.738 |
193.498 |
| Denmark |
China |
1.0000 |
0.576 |
0.012 |
5.077 |
- Significant difference between USA and China
- USA displayed 2.7 times higher odds of endometriosis-associated genomes
- No significant difference between USA vs. Denmark or Denmark vs. China
- Likely due to the limited amount of danish and chinese genomes represented